If you’re dreaming of a cozy fall treat that feels like a warm hug, these Pumpkin Cheesecake Muffins with Caramel Swirl Recipe are exactly what you need. Bursting with the rich flavors of pumpkin and spice, each muffin boasts a creamy cheesecake center and a luscious ribbon of caramel that melts in your mouth. Whether you’re savoring them for breakfast, afternoon tea, or a dessert, these muffins bring a perfect balance of sweet and spice that’s truly irresistible. Trust me, once you try this Pumpkin Cheesecake Muffins with Caramel Swirl Recipe, it’ll quickly become your go-to comfort baked good.

Ingredients You’ll Need
The magic behind these muffins lies in a handful of simple, wholesome ingredients that come together beautifully. From the vibrant pumpkin puree giving color and moisture, to the creamy cheese creating that iconic texture, each component plays a crucial role in crafting the perfect bite.
- 1 cup pumpkin puree: Provides natural moisture, vibrant color, and that unmistakable pumpkin flavor.
- 8 oz cream cheese, softened: Offers a luscious, rich texture and tang to the cheesecake swirl.
- 1/2 cup granulated sugar: Sweetens the batter without overpowering the spices.
- 1/4 cup brown sugar: Adds a deep, caramel-like sweetness enhancing the autumnal vibe.
- 1 1/2 cups all-purpose flour: Forms the structure to keep the muffins tender but sturdy.
- 2 large eggs: Bind the ingredients while contributing to the moisture and richness.
- 2 tsp baking powder: Gives the muffins that perfect rise and fluffy texture.
- 1 tsp cinnamon: Classic warming spice that complements pumpkin beautifully.
- 1/2 tsp nutmeg: Adds subtle depth and a cozy, spiced aroma.
- 1/2 cup caramel sauce: Swirled on top for a gooey, decadent finish that elevates every bite.
- 1 tsp vanilla extract: Rounds out the flavors with fragrant sweetness.
How to Make Pumpkin Cheesecake Muffins with Caramel Swirl Recipe
Step 1: Prepare Your Oven and Muffin Tin
Preheat your oven to 350°F (175°C) to ensure it’s ready when your batter is mixed. Line a muffin tin with paper liners or spray with nonstick cooking spray to prevent sticking and make cleanup a breeze.
Step 2: Mix the Wet Ingredients
In a large bowl, combine the pumpkin puree, softened cream cheese, granulated sugar, brown sugar, and vanilla extract. Beat these together until the mixture becomes smooth and creamy—this will be your flavorful base that marries creamy cheesecake with the earthy pumpkin.
Step 3: Combine the Dry Ingredients
In a separate bowl, whisk together the all-purpose flour, baking powder, cinnamon, nutmeg, and a pinch of salt. Mixing the dry components first ensures even distribution of the spices and leavening agents throughout the batter.
Step 4: Incorporate Dry into Wet
Gradually add the dry ingredient mixture to the wet ingredients, stirring gently until just combined. Don’t overmix here, or you might end up with tough muffins instead of soft and tender ones. The batter will be thick and luscious, promising a moist muffin.
Step 5: Assemble the Muffins
Spoon half of the batter evenly into each muffin cup. Then, place a dollop of cream cheese filling in the center of each, followed by the remaining batter on top. Finally, swirl the caramel sauce over each muffin to create those irresistible caramel ribbons.
Step 6: Bake to Perfection
Bake for 20 to 25 minutes until the muffins turn a gorgeous golden brown and a toothpick inserted in the center (avoiding the caramel swirl) comes out clean. Let them cool in the pan for 10 minutes before transferring to a wire rack to finish cooling and set.
How to Serve Pumpkin Cheesecake Muffins with Caramel Swirl Recipe

Garnishes
To make your Pumpkin Cheesecake Muffins with Caramel Swirl Recipe look absolutely irresistible, sprinkle chopped toasted pecans or walnuts on top before baking or just after they cool. A light dusting of powdered sugar or a drizzle of extra caramel sauce adds a lovely finishing touch and a hint of extra sweetness.
Side Dishes
Pair these muffins with a hot cup of spiced chai tea or fresh brewed coffee to complement the spices and creamy caramel. For a heartier brunch, serve alongside a fresh fruit salad or warm apple compote to keep the flavors seasonal and fresh.
Creative Ways to Present
Turn this Pumpkin Cheesecake Muffins with Caramel Swirl Recipe into a festive display by stacking them on a rustic wooden board or serving tier. Wrap individual muffins in parchment tied with twine for a charming gift or party favor that’s sure to delight friends and family alike.
Make Ahead and Storage
Storing Leftovers
Once completely cooled, store any leftover Pumpkin Cheesecake Muffins with Caramel Swirl Recipe in an airtight container at room temperature for up to two days. For longer freshness, refrigerate for up to a week, making sure they are well sealed to prevent drying out.
Freezing
These muffins freeze beautifully. Wrap each muffin individually in plastic wrap and place them in a freezer-safe bag or container. They will keep for up to three months. When ready to enjoy, thaw at room temperature or gently warm in the microwave.
Reheating
To bring back that freshly baked warmth, heat your Pumpkin Cheesecake Muffins with Caramel Swirl Recipe in the microwave for about 15-20 seconds or pop them in a preheated oven at 300°F for 5 to 7 minutes. This revives the softness and caramel glaze perfectly.
FAQs
Can I use canned pumpkin for this recipe?
Absolutely! Use plain canned pumpkin puree (not pumpkin pie filling) for convenience and consistent flavor. It’s a time-saver without compromising the delicious taste of your muffins.
Is it possible to make this recipe dairy-free?
Yes, you can substitute the cream cheese with a dairy-free alternative and use a non-dairy caramel sauce. Just ensure the cream cheese alternative is soft and spreadable for the best swirl effect.
Can I make these muffins gluten-free?
Certainly! Swap the all-purpose flour with a gluten-free all-purpose blend that includes xanthan gum to maintain structure. The muffins will still be moist and delightful.
How do I prevent the caramel from sinking to the bottom?
To keep the caramel swirls attractive and on top, swirl the caramel gently over the batter’s surface just before baking and avoid stirring it in. The slight thickness of caramel helps it stay suspended during baking.
Can I prepare the batter the night before?
Yes! You can prepare the batter and store it in the fridge overnight. Just give it a gentle stir before filling the muffin cups to ensure even texture, then bake fresh in the morning for the best results.
Final Thoughts
If you’re searching for a treat that combines the heartwarming flavors of fall with a creamy, indulgent twist, this Pumpkin Cheesecake Muffins with Caramel Swirl Recipe is calling your name. They’re easy enough for a weekend baking session yet impressive enough to share with company. I can’t wait for you to try them and savor all those cozy layers of flavor!
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Pumpkin Cheesecake Muffins with Caramel Swirl Recipe
- Prep Time: 15 minutes
- Cook Time: 25 minutes
- Total Time: 40 minutes
- Yield: 12 servings
- Category: Dessert
- Method: Baking
- Cuisine: American
Description
These Pumpkin Cheesecake Muffins with Caramel Swirl are a delightful autumn treat combining moist pumpkin spice muffin with creamy cheesecake and a luscious caramel swirl on top. Perfect for breakfast, snack, or dessert, these muffins are easy to make and packed with warm fall flavors.
Ingredients
Main Ingredients
- 1 cup pumpkin puree
- 8 oz cream cheese, softened
- 1/2 cup granulated sugar
- 1/4 cup brown sugar
- 1 1/2 cups all-purpose flour
- 2 large eggs
- 2 tsp baking powder
- 1 tsp cinnamon
- 1/2 tsp nutmeg
- 1/4 tsp salt
- 1 tsp vanilla extract
- 1/2 cup caramel sauce (store-bought or homemade)
Instructions
- Preheat and Prepare: Preheat your oven to 350°F (175°C). Line a muffin tin with paper liners or spray it with nonstick cooking spray to prevent sticking.
- Mix Wet Ingredients: In a large bowl, combine the pumpkin puree, softened cream cheese, granulated sugar, brown sugar, and vanilla extract. Mix until the mixture is smooth and well incorporated.
- Combine Dry Ingredients: In a separate bowl, whisk together the all-purpose flour, baking powder, cinnamon, nutmeg, and salt. This ensures even distribution of leavening and spices.
- Combine Wet and Dry: Gradually add the dry ingredients to the wet mixture. Stir gently just until combined, being careful not to overmix to maintain tender muffins.
- Fill Muffin Cups: Spoon half of the batter into each muffin cup. Add a dollop of the cream cheese filling in the center of each cup, then top with the remaining batter. Swirl caramel sauce on top of each muffin for a beautiful caramel swirl.
- Bake: Place the muffin tin in the oven and bake for 20 to 25 minutes until the muffins are golden brown and a toothpick inserted in the center comes out clean.
- Cool: Let the muffins cool in the pan for 10 minutes before transferring them to a wire rack to cool completely or serve warm.
Notes
- You can use either store-bought or homemade caramel sauce depending on your preference.
- Make sure the cream cheese is softened to room temperature for easier mixing.
- Don’t overmix the batter to keep the muffins light and fluffy.
- These muffins can be stored in an airtight container at room temperature for up to 3 days or refrigerated for up to a week.
- For a dairy-free version, substitute cream cheese with a vegan cream cheese alternative and use a dairy-free caramel sauce.

